KRC24772.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC24772.1

Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)

Predicted Functional Partners:

KRC24775.1

0.961

KRC24776.1

0.940

KRC24773.1

0.937

KRC24774.1

0.905

KRC27827.1

0.818

KRC24777.1

0.788

KRC24771.1

0.628

KRC22620.1

0.614

KRC28179.1

0.431

KRC17566.1

0.429

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC17566.1	KRC24772.1	ASE31_29280	ASE31_20060	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
KRC22620.1	KRC24771.1	ASE31_22390	ASE31_20055	Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome oxidase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.607
KRC22620.1	KRC24772.1	ASE31_22390	ASE31_20060	Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.614
KRC22620.1	KRC24775.1	ASE31_22390	ASE31_20075	Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.791
KRC22620.1	KRC24777.1	ASE31_22390	ASE31_20085	Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.890
KRC22620.1	KRC28179.1	ASE31_22390	ASE31_13525	Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.887
KRC24771.1	KRC22620.1	ASE31_20055	ASE31_22390	Cytochrome oxidase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.607
KRC24771.1	KRC24772.1	ASE31_20055	ASE31_20060	Cytochrome oxidase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.628
KRC24771.1	KRC24773.1	ASE31_20055	ASE31_20065	Cytochrome oxidase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.536
KRC24771.1	KRC24774.1	ASE31_20055	ASE31_20070	Cytochrome oxidase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.407
KRC24771.1	KRC24775.1	ASE31_20055	ASE31_20075	Cytochrome oxidase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.849
KRC24771.1	KRC24776.1	ASE31_20055	ASE31_20080	Cytochrome oxidase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
KRC24771.1	KRC24777.1	ASE31_20055	ASE31_20085	Cytochrome oxidase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.872
KRC24771.1	KRC27827.1	ASE31_20055	ASE31_13515	Cytochrome oxidase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.657
KRC24771.1	KRC28179.1	ASE31_20055	ASE31_13525	Cytochrome oxidase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.806
KRC24772.1	KRC17566.1	ASE31_20060	ASE31_29280	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
KRC24772.1	KRC22620.1	ASE31_20060	ASE31_22390	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.614
KRC24772.1	KRC24771.1	ASE31_20060	ASE31_20055	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome oxidase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.628
KRC24772.1	KRC24773.1	ASE31_20060	ASE31_20065	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.937
KRC24772.1	KRC24774.1	ASE31_20060	ASE31_20070	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905