KRC24829.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC24829.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (689 aa)

Predicted Functional Partners:

KRC24902.1

0.999

polA

0.978

ASE31_10430

0.962

KRC26887.1

0.962

recA

0.949

KRC27184.1

0.917

KRC17509.1

0.912

KRC24866.1

0.878

ligD

0.878

KRC23974.1

0.834

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASE31_10430	KRC17509.1	ASE31_10430	ASE31_30250	Recombinase RecQ; Catalyzes the formation of fumarate from malate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
ASE31_10430	KRC23974.1	ASE31_10430	ASE31_01445	Recombinase RecQ; Catalyzes the formation of fumarate from malate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.687
ASE31_10430	KRC24829.1	ASE31_10430	ASE31_20400	Recombinase RecQ; Catalyzes the formation of fumarate from malate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
ASE31_10430	KRC24902.1	ASE31_10430	ASE31_20800	Recombinase RecQ; Catalyzes the formation of fumarate from malate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metallophosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
ASE31_10430	KRC26887.1	ASE31_10430	ASE31_15645	Recombinase RecQ; Catalyzes the formation of fumarate from malate; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.890
ASE31_10430	KRC27184.1	ASE31_10430	ASE31_17360	Recombinase RecQ; Catalyzes the formation of fumarate from malate; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA topoisomerase III; Decatenates replicating daughter chromosomes; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
ASE31_10430	polA	ASE31_10430	ASE31_03465	Recombinase RecQ; Catalyzes the formation of fumarate from malate; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.992
ASE31_10430	recA	ASE31_10430	ASE31_17425	Recombinase RecQ; Catalyzes the formation of fumarate from malate; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA recombination/repair protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.	0.987
KRC17509.1	ASE31_10430	ASE31_30250	ASE31_10430	Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; Derived by automated computational analysis using gene prediction method: Protein Homology.	Recombinase RecQ; Catalyzes the formation of fumarate from malate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
KRC17509.1	KRC23974.1	ASE31_30250	ASE31_01445	Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.563
KRC17509.1	KRC24829.1	ASE31_30250	ASE31_20400	Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
KRC17509.1	KRC24866.1	ASE31_30250	ASE31_20590	Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.862
KRC17509.1	KRC24902.1	ASE31_30250	ASE31_20800	Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metallophosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.832
KRC17509.1	KRC26887.1	ASE31_30250	ASE31_15645	Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
KRC17509.1	KRC27184.1	ASE31_30250	ASE31_17360	Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA topoisomerase III; Decatenates replicating daughter chromosomes; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.806
KRC17509.1	ligD	ASE31_30250	ASE31_23245	Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent DNA ligase; Catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.862
KRC17509.1	polA	ASE31_30250	ASE31_03465	Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.998
KRC17509.1	recA	ASE31_30250	ASE31_17425	Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA recombination/repair protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.	0.964
KRC23974.1	ASE31_10430	ASE31_01445	ASE31_10430	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	Recombinase RecQ; Catalyzes the formation of fumarate from malate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.687
KRC23974.1	KRC17509.1	ASE31_01445	ASE31_30250	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563