STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRC24872.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (184 aa)    
Predicted Functional Partners:
KRC24873.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.746
KRC17653.1
Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.701
KRC21979.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.575
KRC24890.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.561
KRC24866.1
DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.479
KRC24871.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.474
ligD
ATP-dependent DNA ligase; Catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.468
KRC12656.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.403
Your Current Organism:
Acidovorax sp. Root217
NCBI taxonomy Id: 1736492
Other names: A. sp. Root217
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.