STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRC24304.1Porin; Derived by automated computational analysis using gene prediction method: Protein Homology. (345 aa)    
Predicted Functional Partners:
KRC19208.1
Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.746
KRC16998.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.743
KRC27256.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.741
KRC27022.1
Deacylase; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family.
  
 
 
 0.710
KRC27157.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.670
KRC11773.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.664
KRC30567.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.663
KRC23390.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.662
KRC23498.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.656
KRC23212.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.652
Your Current Organism:
Acidovorax sp. Root217
NCBI taxonomy Id: 1736492
Other names: A. sp. Root217
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.