KRC24336.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC24336.1

Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)

Predicted Functional Partners:

KRC17782.1

0.770

KRC23853.1

0.625

KRC16849.1

0.625

KRC23852.1

0.616

KRC18427.1

0.614

KRC18425.1

0.604

KRC18442.1

0.604

flgI

0.601

KRC29450.1

0.596

flgH

0.561

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC16849.1	KRC17782.1	ASE31_06990	ASE31_28665	Response regulator receiver protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.754
KRC16849.1	KRC18425.1	ASE31_06990	ASE31_27930	Response regulator receiver protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.686
KRC16849.1	KRC18427.1	ASE31_06990	ASE31_27940	Response regulator receiver protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar biosynthesis protein FlgK; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flagella basal body rod proteins family.	0.465
KRC16849.1	KRC18442.1	ASE31_06990	ASE31_28020	Response regulator receiver protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar biosynthesis protein FlhF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.716
KRC16849.1	KRC23852.1	ASE31_06990	ASE31_04530	Response regulator receiver protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.441
KRC16849.1	KRC24336.1	ASE31_06990	ASE31_21155	Response regulator receiver protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.625
KRC16849.1	KRC29450.1	ASE31_06990	ASE31_12145	Response regulator receiver protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
KRC17782.1	KRC16849.1	ASE31_28665	ASE31_06990	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Response regulator receiver protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.754
KRC17782.1	KRC18425.1	ASE31_28665	ASE31_27930	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.573
KRC17782.1	KRC18427.1	ASE31_28665	ASE31_27940	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar biosynthesis protein FlgK; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flagella basal body rod proteins family.	0.488
KRC17782.1	KRC18442.1	ASE31_28665	ASE31_28020	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar biosynthesis protein FlhF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.488
KRC17782.1	KRC23852.1	ASE31_28665	ASE31_04530	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.458
KRC17782.1	KRC23853.1	ASE31_28665	ASE31_04535	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
KRC17782.1	KRC24336.1	ASE31_28665	ASE31_21155	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
KRC17782.1	KRC29450.1	ASE31_28665	ASE31_12145	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.660
KRC17782.1	flgH	ASE31_28665	ASE31_27960	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar biosynthesis protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.400
KRC17782.1	flgI	ASE31_28665	ASE31_27950	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar biosynthesis protein FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.456
KRC18425.1	KRC16849.1	ASE31_27930	ASE31_06990	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Response regulator receiver protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.686
KRC18425.1	KRC17782.1	ASE31_27930	ASE31_28665	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.573
KRC18425.1	KRC18427.1	ASE31_27930	ASE31_27940	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar biosynthesis protein FlgK; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flagella basal body rod proteins family.	0.755