KRC24366.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC24366.1

Urea ABC transporter ATP-binding protein UrtD; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)

Predicted Functional Partners:

KRC24367.1

0.985

KRC24368.1

0.983

KRC24369.1

0.952

KRC26868.1

0.937

KRC26869.1

0.937

KRC19146.1

0.908

KRC26870.1

0.904

KRC19335.1

0.879

KRC19336.1

0.876

KRC26866.1

0.814

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC19146.1	KRC24366.1	ASE31_05810	ASE31_21350	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea ABC transporter ATP-binding protein UrtD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
KRC19146.1	KRC24367.1	ASE31_05810	ASE31_21355	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea ABC transporter permease subunit UrtC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.924
KRC19146.1	KRC24368.1	ASE31_05810	ASE31_21360	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.920
KRC19146.1	KRC26866.1	ASE31_05810	ASE31_15540	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea ABC transporter ATP-binding subunit UrtE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
KRC19146.1	KRC26868.1	ASE31_05810	ASE31_15550	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea ABC transporter permease subunit UrtC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.924
KRC19146.1	KRC26869.1	ASE31_05810	ASE31_15555	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea ABC transporter permease subunit UrtB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.920
KRC19335.1	KRC24366.1	ASE31_05835	ASE31_21350	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea ABC transporter ATP-binding protein UrtD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.879
KRC19335.1	KRC24367.1	ASE31_05835	ASE31_21355	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea ABC transporter permease subunit UrtC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.913
KRC19335.1	KRC24368.1	ASE31_05835	ASE31_21360	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.906
KRC19335.1	KRC26866.1	ASE31_05835	ASE31_15540	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea ABC transporter ATP-binding subunit UrtE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.890
KRC19335.1	KRC26868.1	ASE31_05835	ASE31_15550	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea ABC transporter permease subunit UrtC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.921
KRC19335.1	KRC26869.1	ASE31_05835	ASE31_15555	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea ABC transporter permease subunit UrtB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.914
KRC19336.1	KRC24366.1	ASE31_05845	ASE31_21350	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea ABC transporter ATP-binding protein UrtD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.876
KRC19336.1	KRC24367.1	ASE31_05845	ASE31_21355	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea ABC transporter permease subunit UrtC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.911
KRC19336.1	KRC24368.1	ASE31_05845	ASE31_21360	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.905
KRC19336.1	KRC26866.1	ASE31_05845	ASE31_15540	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea ABC transporter ATP-binding subunit UrtE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.887
KRC19336.1	KRC26868.1	ASE31_05845	ASE31_15550	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea ABC transporter permease subunit UrtC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.920
KRC19336.1	KRC26869.1	ASE31_05845	ASE31_15555	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea ABC transporter permease subunit UrtB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.913
KRC24366.1	KRC19146.1	ASE31_21350	ASE31_05810	Urea ABC transporter ATP-binding protein UrtD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
KRC24366.1	KRC19335.1	ASE31_21350	ASE31_05835	Urea ABC transporter ATP-binding protein UrtD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.879