KRC22543.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC22543.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (129 aa)

Predicted Functional Partners:

KRC22545.1

0.875

KRC19200.1

0.735

KRC22544.1

0.690

KRC22542.1

0.620

KRC22547.1

0.444

KRC22549.1

0.409

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC19200.1	KRC22542.1	ASE31_06125	ASE31_21930	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.528
KRC19200.1	KRC22543.1	ASE31_06125	ASE31_21935	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.735
KRC19200.1	KRC22544.1	ASE31_06125	ASE31_21940	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.881
KRC22542.1	KRC19200.1	ASE31_21930	ASE31_06125	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.528
KRC22542.1	KRC22543.1	ASE31_21930	ASE31_21935	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.620
KRC22542.1	KRC22544.1	ASE31_21930	ASE31_21940	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.589
KRC22542.1	KRC22545.1	ASE31_21930	ASE31_21945	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
KRC22542.1	KRC22547.1	ASE31_21930	ASE31_21955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.480
KRC22542.1	KRC22549.1	ASE31_21930	ASE31_21970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfite oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
KRC22543.1	KRC19200.1	ASE31_21935	ASE31_06125	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.735
KRC22543.1	KRC22542.1	ASE31_21935	ASE31_21930	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.620
KRC22543.1	KRC22544.1	ASE31_21935	ASE31_21940	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.690
KRC22543.1	KRC22545.1	ASE31_21935	ASE31_21945	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.875
KRC22543.1	KRC22547.1	ASE31_21935	ASE31_21955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
KRC22543.1	KRC22549.1	ASE31_21935	ASE31_21970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfite oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
KRC22544.1	KRC19200.1	ASE31_21940	ASE31_06125	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.881
KRC22544.1	KRC22542.1	ASE31_21940	ASE31_21930	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.589
KRC22544.1	KRC22543.1	ASE31_21940	ASE31_21935	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.690
KRC22544.1	KRC22545.1	ASE31_21940	ASE31_21945	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.965
KRC22544.1	KRC22547.1	ASE31_21940	ASE31_21955	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.450