KRC22548.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC22548.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)

Predicted Functional Partners:

KRC22644.1

0.783

KRC22549.1

0.783

KRC22550.1

0.776

KRC22546.1

0.574

KRC22547.1

0.574

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC22546.1	KRC22547.1	ASE31_21950	ASE31_21955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
KRC22546.1	KRC22548.1	ASE31_21950	ASE31_21965	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.574
KRC22546.1	KRC22549.1	ASE31_21950	ASE31_21970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfite oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.710
KRC22546.1	KRC22550.1	ASE31_21950	ASE31_21975	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
KRC22546.1	KRC22644.1	ASE31_21950	ASE31_21960	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.733
KRC22547.1	KRC22546.1	ASE31_21955	ASE31_21950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
KRC22547.1	KRC22548.1	ASE31_21955	ASE31_21965	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.574
KRC22547.1	KRC22549.1	ASE31_21955	ASE31_21970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfite oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.574
KRC22547.1	KRC22550.1	ASE31_21955	ASE31_21975	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.654
KRC22547.1	KRC22644.1	ASE31_21955	ASE31_21960	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.595
KRC22548.1	KRC22546.1	ASE31_21965	ASE31_21950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.574
KRC22548.1	KRC22547.1	ASE31_21965	ASE31_21955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.574
KRC22548.1	KRC22549.1	ASE31_21965	ASE31_21970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfite oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
KRC22548.1	KRC22550.1	ASE31_21965	ASE31_21975	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.776
KRC22548.1	KRC22644.1	ASE31_21965	ASE31_21960	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.783
KRC22549.1	KRC22546.1	ASE31_21970	ASE31_21950	Sulfite oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.710
KRC22549.1	KRC22547.1	ASE31_21970	ASE31_21955	Sulfite oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.574
KRC22549.1	KRC22548.1	ASE31_21970	ASE31_21965	Sulfite oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
KRC22549.1	KRC22550.1	ASE31_21970	ASE31_21975	Sulfite oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.986
KRC22549.1	KRC22644.1	ASE31_21970	ASE31_21960	Sulfite oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.803