ASE31_22045 protein (Acidovorax sp. Root217)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ASE31_22045

Type II restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology. (648 aa)

Predicted Functional Partners:

KRC22563.1

0.996

KRC22564.1

0.993

KRC22559.1

0.988

KRC25679.1

0.888

KRC22562.1

0.864

KRC11791.1

0.403

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASE31_22045	KRC11791.1	ASE31_22045	ASE31_11395	Type II restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.403
ASE31_22045	KRC22559.1	ASE31_22045	ASE31_22025	Type II restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
ASE31_22045	KRC22562.1	ASE31_22045	ASE31_22050	Type II restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.864
ASE31_22045	KRC22563.1	ASE31_22045	ASE31_22055	Type II restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
ASE31_22045	KRC22564.1	ASE31_22045	ASE31_22060	Type II restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent Lon protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
ASE31_22045	KRC25679.1	ASE31_22045	ASE31_19145	Type II restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.888
KRC11791.1	ASE31_22045	ASE31_11395	ASE31_22045	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type II restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.403
KRC22559.1	ASE31_22045	ASE31_22025	ASE31_22045	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type II restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
KRC22559.1	KRC22562.1	ASE31_22025	ASE31_22050	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
KRC22559.1	KRC22563.1	ASE31_22025	ASE31_22055	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
KRC22559.1	KRC22564.1	ASE31_22025	ASE31_22060	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent Lon protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
KRC22559.1	KRC25679.1	ASE31_22025	ASE31_19145	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.871
KRC22562.1	ASE31_22045	ASE31_22050	ASE31_22045	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type II restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.864
KRC22562.1	KRC22559.1	ASE31_22050	ASE31_22025	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
KRC22562.1	KRC22563.1	ASE31_22050	ASE31_22055	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
KRC22562.1	KRC22564.1	ASE31_22050	ASE31_22060	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent Lon protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.862
KRC22562.1	KRC25679.1	ASE31_22050	ASE31_19145	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.416
KRC22563.1	ASE31_22045	ASE31_22055	ASE31_22045	Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type II restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
KRC22563.1	KRC22559.1	ASE31_22055	ASE31_22025	Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
KRC22563.1	KRC22562.1	ASE31_22055	ASE31_22050	Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851