KRC22589.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC22589.1

Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (172 aa)

Predicted Functional Partners:

KRC22586.1

0.903

KRC27103.1

0.779

KRC22588.1

0.754

KRC27102.1

0.743

KRC18494.1

0.683

KRC22590.1

0.675

KRC30676.1

0.671

KRC30715.1

0.669

KRC30680.1

0.665

KRC22587.1

0.632

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC18494.1	KRC22586.1	ASE31_27510	ASE31_22195	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.654
KRC18494.1	KRC22588.1	ASE31_27510	ASE31_22205	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.693
KRC18494.1	KRC22589.1	ASE31_27510	ASE31_22210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.683
KRC18494.1	KRC22590.1	ASE31_27510	ASE31_22215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.684
KRC18494.1	KRC27102.1	ASE31_27510	ASE31_16855	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Asparaginyl beta-hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.746
KRC18494.1	KRC27103.1	ASE31_27510	ASE31_16860	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.722
KRC22586.1	KRC18494.1	ASE31_22195	ASE31_27510	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.654
KRC22586.1	KRC22587.1	ASE31_22195	ASE31_22200	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705
KRC22586.1	KRC22588.1	ASE31_22195	ASE31_22205	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
KRC22586.1	KRC22589.1	ASE31_22195	ASE31_22210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
KRC22586.1	KRC22590.1	ASE31_22195	ASE31_22215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.885
KRC22586.1	KRC27102.1	ASE31_22195	ASE31_16855	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Asparaginyl beta-hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.755
KRC22587.1	KRC22586.1	ASE31_22200	ASE31_22195	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705
KRC22587.1	KRC22588.1	ASE31_22200	ASE31_22205	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.658
KRC22587.1	KRC22589.1	ASE31_22200	ASE31_22210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632
KRC22587.1	KRC22590.1	ASE31_22200	ASE31_22215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.542
KRC22588.1	KRC18494.1	ASE31_22205	ASE31_27510	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.693
KRC22588.1	KRC22586.1	ASE31_22205	ASE31_22195	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
KRC22588.1	KRC22587.1	ASE31_22205	ASE31_22200	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.658
KRC22588.1	KRC22589.1	ASE31_22205	ASE31_22210	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.754