KRC21447.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC21447.1

NADPH:quinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)

Predicted Functional Partners:

KRC21446.1

0.583

KRC21448.1

0.552

KRC12910.1

0.503

KRC20385.1

0.491

KRC27766.1

0.483

KRC23260.1

0.474

KRC19329.1

0.474

KRC20097.1

0.474

KRC14885.1

0.462

KRC28034.1

0.462

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC12910.1	KRC14885.1	ASE31_10030	ASE31_09110	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.725
KRC12910.1	KRC19329.1	ASE31_10030	ASE31_05550	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
KRC12910.1	KRC20097.1	ASE31_10030	ASE31_26345	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	CDP-6-deoxy-delta-3,4-glucoseen reductase; Catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
KRC12910.1	KRC20385.1	ASE31_10030	ASE31_25760	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.843
KRC12910.1	KRC21446.1	ASE31_10030	ASE31_23580	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.464
KRC12910.1	KRC21447.1	ASE31_10030	ASE31_23585	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	NADPH:quinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.503
KRC12910.1	KRC23260.1	ASE31_10030	ASE31_01170	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	Naphthalene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
KRC12910.1	KRC27766.1	ASE31_10030	ASE31_13155	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	Carbamoyl-phosphate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
KRC12910.1	KRC28034.1	ASE31_10030	ASE31_14675	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.725
KRC14885.1	KRC12910.1	ASE31_09110	ASE31_10030	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.725
KRC14885.1	KRC19329.1	ASE31_09110	ASE31_05550	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
KRC14885.1	KRC20097.1	ASE31_09110	ASE31_26345	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	CDP-6-deoxy-delta-3,4-glucoseen reductase; Catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
KRC14885.1	KRC20385.1	ASE31_09110	ASE31_25760	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
KRC14885.1	KRC21447.1	ASE31_09110	ASE31_23585	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADPH:quinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.462
KRC14885.1	KRC23260.1	ASE31_09110	ASE31_01170	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Naphthalene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
KRC14885.1	KRC27766.1	ASE31_09110	ASE31_13155	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbamoyl-phosphate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.918
KRC14885.1	KRC28034.1	ASE31_09110	ASE31_14675	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
KRC19329.1	KRC12910.1	ASE31_05550	ASE31_10030	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.989
KRC19329.1	KRC14885.1	ASE31_05550	ASE31_09110	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
KRC19329.1	KRC20097.1	ASE31_05550	ASE31_26345	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	CDP-6-deoxy-delta-3,4-glucoseen reductase; Catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.867