KRC20817.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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[Homology]

Score

KRC20817.1

Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)

Predicted Functional Partners:

KRC20816.1

0.973

KRC20983.1

0.961

KRC20819.1

0.813

KRC20820.1

0.785

KRC20818.1

0.773

KRC20982.1

0.765

KRC24328.1

0.632

KRC19313.1

0.625

KRC24339.1

0.610

KRC11874.1

0.608

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC11874.1	KRC19313.1	ASE31_11885	ASE31_06790	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.640
KRC11874.1	KRC20816.1	ASE31_11885	ASE31_24335	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.832
KRC11874.1	KRC20817.1	ASE31_11885	ASE31_24340	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.608
KRC11874.1	KRC20983.1	ASE31_11885	ASE31_24330	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.765
KRC11874.1	KRC24328.1	ASE31_11885	ASE31_21115	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
KRC11874.1	KRC24339.1	ASE31_11885	ASE31_21170	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.525
KRC19313.1	KRC11874.1	ASE31_06790	ASE31_11885	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.640
KRC19313.1	KRC20816.1	ASE31_06790	ASE31_24335	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.640
KRC19313.1	KRC20817.1	ASE31_06790	ASE31_24340	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.625
KRC19313.1	KRC20983.1	ASE31_06790	ASE31_24330	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.753
KRC20816.1	KRC11874.1	ASE31_24335	ASE31_11885	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.832
KRC20816.1	KRC19313.1	ASE31_24335	ASE31_06790	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.640
KRC20816.1	KRC20817.1	ASE31_24335	ASE31_24340	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.973
KRC20816.1	KRC20818.1	ASE31_24335	ASE31_24345	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
KRC20816.1	KRC20819.1	ASE31_24335	ASE31_24350	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidase; Catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
KRC20816.1	KRC20820.1	ASE31_24335	ASE31_24355	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.747
KRC20816.1	KRC20982.1	ASE31_24335	ASE31_24325	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.722
KRC20816.1	KRC20983.1	ASE31_24335	ASE31_24330	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.971
KRC20816.1	KRC24328.1	ASE31_24335	ASE31_21115	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
KRC20816.1	KRC24339.1	ASE31_24335	ASE31_21170	Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.528