KRC20948.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC20948.1

Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (800 aa)

Predicted Functional Partners:

KRC24017.1

0.939

KRC16946.1

0.938

KRC22487.1

0.924

KRC20950.1

0.783

ligA

0.780

KRC20949.1

0.773

mrdA

0.747

mtgA

0.711

mrdB

0.588

ftsI

0.532

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC16946.1	KRC20948.1	ASE31_07565	ASE31_25125	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.938
KRC16946.1	KRC22487.1	ASE31_07565	ASE31_21600	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S11 family.	0.924
KRC16946.1	KRC24017.1	ASE31_07565	ASE31_03560	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Penicillin-binding protein 1C; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.940
KRC16946.1	ftsI	ASE31_07565	ASE31_15120	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum.	0.553
KRC16946.1	mrdA	ASE31_07565	ASE31_21785	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.	0.570
KRC16946.1	mrdB	ASE31_07565	ASE31_01490	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.	0.729
KRC16946.1	mtgA	ASE31_07565	ASE31_01450	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.	0.716
KRC20948.1	KRC16946.1	ASE31_25125	ASE31_07565	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.938
KRC20948.1	KRC20949.1	ASE31_25125	ASE31_25135	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
KRC20948.1	KRC20950.1	ASE31_25125	ASE31_25140	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsZ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
KRC20948.1	KRC22487.1	ASE31_25125	ASE31_21600	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S11 family.	0.924
KRC20948.1	KRC24017.1	ASE31_25125	ASE31_03560	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Penicillin-binding protein 1C; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.939
KRC20948.1	ftsI	ASE31_25125	ASE31_15120	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum.	0.532
KRC20948.1	ligA	ASE31_25125	ASE31_25130	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aromatic ring-opening dioxygenase LigA; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.	0.780
KRC20948.1	mrdA	ASE31_25125	ASE31_21785	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.	0.747
KRC20948.1	mrdB	ASE31_25125	ASE31_01490	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.	0.588
KRC20948.1	mtgA	ASE31_25125	ASE31_01450	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.	0.711
KRC20949.1	KRC20948.1	ASE31_25135	ASE31_25125	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
KRC20949.1	KRC20950.1	ASE31_25135	ASE31_25140	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Cell division protein FtsZ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.668
KRC20949.1	ligA	ASE31_25135	ASE31_25130	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Aromatic ring-opening dioxygenase LigA; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.	0.773