ASE31_25595 protein (Acidovorax sp. Root217)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ASE31_25595

Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (638 aa)

Predicted Functional Partners:

KRC20357.1

0.966

KRC17671.1

0.887

KRC16916.1

0.886

KRC28123.1

0.885

KRC23163.1

0.868

KRC16836.1

0.866

KRC23482.1

0.863

KRC21383.1

0.861

KRC21920.1

0.858

KRC24923.1

0.857

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASE31_25595	KRC16836.1	ASE31_25595	ASE31_06895	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.866
ASE31_25595	KRC16916.1	ASE31_25595	ASE31_07380	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.886
ASE31_25595	KRC17671.1	ASE31_25595	ASE31_29180	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.887
ASE31_25595	KRC20357.1	ASE31_25595	ASE31_25600	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
ASE31_25595	KRC21383.1	ASE31_25595	ASE31_23240	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
ASE31_25595	KRC21920.1	ASE31_25595	ASE31_22765	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.858
ASE31_25595	KRC23163.1	ASE31_25595	ASE31_00610	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.868
ASE31_25595	KRC23482.1	ASE31_25595	ASE31_02415	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.863
ASE31_25595	KRC24923.1	ASE31_25595	ASE31_20770	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.857
ASE31_25595	KRC28123.1	ASE31_25595	ASE31_15185	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.885
KRC16836.1	ASE31_25595	ASE31_06895	ASE31_25595	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.866
KRC16836.1	KRC16916.1	ASE31_06895	ASE31_07380	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
KRC16836.1	KRC17671.1	ASE31_06895	ASE31_29180	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
KRC16836.1	KRC20357.1	ASE31_06895	ASE31_25600	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
KRC16836.1	KRC21383.1	ASE31_06895	ASE31_23240	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
KRC16836.1	KRC21920.1	ASE31_06895	ASE31_22765	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
KRC16836.1	KRC23163.1	ASE31_06895	ASE31_00610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
KRC16836.1	KRC23482.1	ASE31_06895	ASE31_02415	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
KRC16836.1	KRC24923.1	ASE31_06895	ASE31_20770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
KRC16836.1	KRC28123.1	ASE31_06895	ASE31_15185	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848