KRC20357.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

KRC20357.1

LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa)

Predicted Functional Partners:

KRC27875.1

0.967

ASE31_25595

0.966

KRC18294.1

0.960

KRC17491.1

0.957

KRC29450.1

0.956

KRC17454.1

0.956

KRC24869.1

0.911

KRC21944.1

0.911

KRC21390.1

0.911

KRC18471.1

0.903

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASE31_25595	KRC17454.1	ASE31_25595	ASE31_29980	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.644
ASE31_25595	KRC17491.1	ASE31_25595	ASE31_30220	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.647
ASE31_25595	KRC18294.1	ASE31_25595	ASE31_27180	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.818
ASE31_25595	KRC18471.1	ASE31_25595	ASE31_28195	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.421
ASE31_25595	KRC20357.1	ASE31_25595	ASE31_25600	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
ASE31_25595	KRC21390.1	ASE31_25595	ASE31_23280	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.809
ASE31_25595	KRC21944.1	ASE31_25595	ASE31_22915	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.809
ASE31_25595	KRC24869.1	ASE31_25595	ASE31_20610	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.809
ASE31_25595	KRC27875.1	ASE31_25595	ASE31_13805	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.593
ASE31_25595	KRC29450.1	ASE31_25595	ASE31_12145	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.644
KRC17454.1	ASE31_25595	ASE31_29980	ASE31_25595	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.644
KRC17454.1	KRC17491.1	ASE31_29980	ASE31_30220	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KRC17454.1	KRC18294.1	ASE31_29980	ASE31_27180	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KRC17454.1	KRC18471.1	ASE31_29980	ASE31_28195	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
KRC17454.1	KRC20357.1	ASE31_29980	ASE31_25600	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.956
KRC17454.1	KRC21390.1	ASE31_29980	ASE31_23280	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KRC17454.1	KRC21944.1	ASE31_29980	ASE31_22915	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KRC17454.1	KRC24869.1	ASE31_29980	ASE31_20610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KRC17454.1	KRC27875.1	ASE31_29980	ASE31_13805	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KRC17454.1	KRC29450.1	ASE31_29980	ASE31_12145	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999