KRC20389.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC20389.1

Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)

Predicted Functional Partners:

KRC20388.1

0.968

acpP-2

0.955

KRC20390.1

0.955

KRC20386.1

0.921

KRC20384.1

0.904

KRC20385.1

0.903

KRC20383.1

0.895

KRC20454.1

0.889

KRC20380.1

0.878

KRC20381.1

0.878

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC20380.1	KRC20381.1	ASE31_25735	ASE31_25740	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	0.958
KRC20380.1	KRC20383.1	ASE31_25735	ASE31_25750	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
KRC20380.1	KRC20384.1	ASE31_25735	ASE31_25755	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
KRC20380.1	KRC20385.1	ASE31_25735	ASE31_25760	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.930
KRC20380.1	KRC20386.1	ASE31_25735	ASE31_25765	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.896
KRC20380.1	KRC20388.1	ASE31_25735	ASE31_25775	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
KRC20380.1	KRC20389.1	ASE31_25735	ASE31_25780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.878
KRC20380.1	KRC20390.1	ASE31_25735	ASE31_25785	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.878
KRC20380.1	KRC20454.1	ASE31_25735	ASE31_25715	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
KRC20380.1	acpP-2	ASE31_25735	ASE31_25770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.	0.891
KRC20381.1	KRC20380.1	ASE31_25740	ASE31_25735	Lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
KRC20381.1	KRC20383.1	ASE31_25740	ASE31_25750	Lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
KRC20381.1	KRC20384.1	ASE31_25740	ASE31_25755	Lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
KRC20381.1	KRC20385.1	ASE31_25740	ASE31_25760	Lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
KRC20381.1	KRC20386.1	ASE31_25740	ASE31_25765	Lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
KRC20381.1	KRC20388.1	ASE31_25740	ASE31_25775	Lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.879
KRC20381.1	KRC20389.1	ASE31_25740	ASE31_25780	Lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.878
KRC20381.1	KRC20390.1	ASE31_25740	ASE31_25785	Lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.891
KRC20381.1	KRC20454.1	ASE31_25740	ASE31_25715	Lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
KRC20381.1	acpP-2	ASE31_25740	ASE31_25770	Lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.	0.888