KRC20461.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Cooccurrence

Coexpression

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[Homology]

Score

KRC20461.1

ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)

Predicted Functional Partners:

KRC23577.1

0.823

KRC25651.1

0.823

KRC25723.1

0.782

KRC20460.1

0.506

KRC23576.1

0.417

KRC24048.1

0.408

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC20460.1	KRC20461.1	ASE31_25970	ASE31_25975	Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.506
KRC20461.1	KRC20460.1	ASE31_25975	ASE31_25970	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.506
KRC20461.1	KRC23576.1	ASE31_25975	ASE31_02990	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
KRC20461.1	KRC23577.1	ASE31_25975	ASE31_02995	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.823
KRC20461.1	KRC24048.1	ASE31_25975	ASE31_05070	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Twin-arginine translocation pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
KRC20461.1	KRC25651.1	ASE31_25975	ASE31_18970	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.823
KRC20461.1	KRC25723.1	ASE31_25975	ASE31_19390	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tripartite tricarboxylate transporter TctA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.782
KRC23576.1	KRC20461.1	ASE31_02990	ASE31_25975	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
KRC23576.1	KRC23577.1	ASE31_02990	ASE31_02995	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
KRC23576.1	KRC25651.1	ASE31_02990	ASE31_18970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.674
KRC23576.1	KRC25723.1	ASE31_02990	ASE31_19390	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tripartite tricarboxylate transporter TctA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.716
KRC23577.1	KRC20461.1	ASE31_02995	ASE31_25975	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.823
KRC23577.1	KRC23576.1	ASE31_02995	ASE31_02990	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
KRC23577.1	KRC24048.1	ASE31_02995	ASE31_05070	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Twin-arginine translocation pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.831
KRC23577.1	KRC25651.1	ASE31_02995	ASE31_18970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.730
KRC23577.1	KRC25723.1	ASE31_02995	ASE31_19390	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tripartite tricarboxylate transporter TctA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
KRC24048.1	KRC20461.1	ASE31_05070	ASE31_25975	Twin-arginine translocation pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
KRC24048.1	KRC23577.1	ASE31_05070	ASE31_02995	Twin-arginine translocation pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.831
KRC24048.1	KRC25651.1	ASE31_05070	ASE31_18970	Twin-arginine translocation pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.827
KRC24048.1	KRC25723.1	ASE31_05070	ASE31_19390	Twin-arginine translocation pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tripartite tricarboxylate transporter TctA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.834