KRC47346.1 protein (Leifsonia sp. Root227) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

KRC47346.1

ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)

Predicted Functional Partners:

KRC47476.1

0.972

KRC49170.1

0.884

KRC51908.1

0.883

KRC52361.1

0.883

KRC47426.1

0.882

KRC47398.1

0.879

KRC51656.1

0.878

KRC46815.1

0.878

KRC46955.1

0.875

KRC45381.1

0.869

Your Current Organism:

Leifsonia sp. Root227

NCBI taxonomy Id: 1736496
Other names: L. sp. Root227

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC45381.1	KRC47346.1	ASE16_19140	ASE16_18780	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869
KRC45381.1	KRC47398.1	ASE16_19140	ASE16_15875	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.542
KRC45381.1	KRC49170.1	ASE16_19140	ASE16_10315	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.550
KRC46815.1	KRC47346.1	ASE16_15530	ASE16_18780	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.878
KRC46815.1	KRC47398.1	ASE16_15530	ASE16_15875	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.556
KRC46815.1	KRC49170.1	ASE16_15530	ASE16_10315	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
KRC46955.1	KRC47346.1	ASE16_16340	ASE16_18780	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.875
KRC47346.1	KRC45381.1	ASE16_18780	ASE16_19140	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869
KRC47346.1	KRC46815.1	ASE16_18780	ASE16_15530	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.878
KRC47346.1	KRC46955.1	ASE16_18780	ASE16_16340	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.875
KRC47346.1	KRC47398.1	ASE16_18780	ASE16_15875	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.879
KRC47346.1	KRC47426.1	ASE16_18780	ASE16_17155	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lactose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.882
KRC47346.1	KRC47476.1	ASE16_18780	ASE16_18775	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
KRC47346.1	KRC49170.1	ASE16_18780	ASE16_10315	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
KRC47346.1	KRC51656.1	ASE16_18780	ASE16_00745	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.878
KRC47346.1	KRC51908.1	ASE16_18780	ASE16_02220	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.883
KRC47346.1	KRC52361.1	ASE16_18780	ASE16_04870	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.883
KRC47398.1	KRC45381.1	ASE16_15875	ASE16_19140	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.542
KRC47398.1	KRC46815.1	ASE16_15875	ASE16_15530	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.556
KRC47398.1	KRC47346.1	ASE16_15875	ASE16_18780	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.879