ASE12_03735 protein (Aeromicrobium sp. Root236)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ASE12_03735

Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (189 aa)

Predicted Functional Partners:

KRC63953.1

0.923

KRC63954.1

0.886

KRC63951.1

0.782

KRC63946.1

0.778

KRC63950.1

0.770

KRC63949.1

0.752

KRC65067.1

0.496

KRC64607.1

0.477

KRC65412.1

0.457

KRC64026.1

0.408

Your Current Organism:

Aeromicrobium sp. Root236

NCBI taxonomy Id: 1736498
Other names: A. sp. Root236

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASE12_03735	KRC63946.1	ASE12_03735	ASE12_03700	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
ASE12_03735	KRC63949.1	ASE12_03735	ASE12_03715	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.752
ASE12_03735	KRC63950.1	ASE12_03735	ASE12_03720	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
ASE12_03735	KRC63951.1	ASE12_03735	ASE12_03725	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.782
ASE12_03735	KRC63953.1	ASE12_03735	ASE12_03740	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	S26 family signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
ASE12_03735	KRC63954.1	ASE12_03735	ASE12_03745	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.886
ASE12_03735	KRC64026.1	ASE12_03735	ASE12_04180	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
ASE12_03735	KRC64607.1	ASE12_03735	ASE12_07410	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.477
ASE12_03735	KRC65067.1	ASE12_03735	ASE12_10005	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.496
ASE12_03735	KRC65412.1	ASE12_03735	ASE12_12015	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.457
KRC63946.1	ASE12_03735	ASE12_03700	ASE12_03735	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
KRC63946.1	KRC63949.1	ASE12_03700	ASE12_03715	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.898
KRC63946.1	KRC63950.1	ASE12_03700	ASE12_03720	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.845
KRC63946.1	KRC63953.1	ASE12_03700	ASE12_03740	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	S26 family signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
KRC63946.1	KRC63954.1	ASE12_03700	ASE12_03745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.711
KRC63949.1	ASE12_03735	ASE12_03715	ASE12_03735	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.752
KRC63949.1	KRC63946.1	ASE12_03715	ASE12_03700	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.898
KRC63949.1	KRC63950.1	ASE12_03715	ASE12_03720	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.892
KRC63949.1	KRC63951.1	ASE12_03715	ASE12_03725	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.809
KRC63949.1	KRC63954.1	ASE12_03715	ASE12_03745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.765