KRD06582.1 protein (Mycobacterium sp. Root265)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

KRD06582.1

Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family. (425 aa)

Predicted Functional Partners:

KRD05324.1

0.953

ASE48_31905

0.953

KRD04989.1

0.943

KRD06583.1

0.891

KRD20822.1

0.835

KRD05310.1

0.832

KRD06584.1

0.829

KRD20422.1

0.822

KRD07040.1

0.822

ASE48_08695

0.779

Your Current Organism:

Mycobacterium sp. Root265

NCBI taxonomy Id: 1736504
Other names: M. sp. Root265

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASE48_08695	ASE48_31905	ASE48_08695	ASE48_31905	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PKS_TE domain-containing protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.579
ASE48_08695	KRD04989.1	ASE48_08695	ASE48_20390	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.506
ASE48_08695	KRD05310.1	ASE48_08695	ASE48_19230	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphopantetheine-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.575
ASE48_08695	KRD05324.1	ASE48_08695	ASE48_19345	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.579
ASE48_08695	KRD06582.1	ASE48_08695	ASE48_11400	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.779
ASE48_08695	KRD07040.1	ASE48_08695	ASE48_14055	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.714
ASE48_08695	KRD20422.1	ASE48_08695	ASE48_01025	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.714
ASE48_31905	ASE48_08695	ASE48_31905	ASE48_08695	PKS_TE domain-containing protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.579
ASE48_31905	KRD04989.1	ASE48_31905	ASE48_20390	PKS_TE domain-containing protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASE48_31905	KRD05310.1	ASE48_31905	ASE48_19230	PKS_TE domain-containing protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Phosphopantetheine-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
ASE48_31905	KRD05324.1	ASE48_31905	ASE48_19345	PKS_TE domain-containing protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASE48_31905	KRD06582.1	ASE48_31905	ASE48_11400	PKS_TE domain-containing protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.953
ASE48_31905	KRD07040.1	ASE48_31905	ASE48_14055	PKS_TE domain-containing protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASE48_31905	KRD20422.1	ASE48_31905	ASE48_01025	PKS_TE domain-containing protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASE48_31905	KRD20822.1	ASE48_31905	ASE48_00555	PKS_TE domain-containing protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
KRD04989.1	ASE48_08695	ASE48_20390	ASE48_08695	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.506
KRD04989.1	ASE48_31905	ASE48_20390	ASE48_31905	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PKS_TE domain-containing protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
KRD04989.1	KRD05310.1	ASE48_20390	ASE48_19230	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphopantetheine-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
KRD04989.1	KRD05324.1	ASE48_20390	ASE48_19345	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KRD04989.1	KRD06582.1	ASE48_20390	ASE48_11400	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.943