KQV26567.1 protein (Yonghaparkia sp. Root332)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

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[Homology]

Score

KQV26567.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (128 aa)

Predicted Functional Partners:

KQV26568.1

0.958

KQV26565.1

0.946

KQV26566.1

0.939

KQV26894.1

0.929

KQV24465.1

0.810

KQV26893.1

0.795

KQV24466.1

0.782

KQV24464.1

0.769

KQV24806.1

0.762

KQV24463.1

0.747

Your Current Organism:

Yonghaparkia sp. Root332

NCBI taxonomy Id: 1736516
Other names: Y. sp. Root332

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQV24463.1	KQV24464.1	ASC54_07885	ASC54_07890	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.786
KQV24463.1	KQV24465.1	ASC54_07885	ASC54_07895	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.801
KQV24463.1	KQV24466.1	ASC54_07885	ASC54_07900	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.812
KQV24463.1	KQV24806.1	ASC54_07885	ASC54_09920	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.764
KQV24463.1	KQV26565.1	ASC54_07885	ASC54_06800	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.759
KQV24463.1	KQV26566.1	ASC54_07885	ASC54_06805	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.754
KQV24463.1	KQV26567.1	ASC54_07885	ASC54_06810	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.747
KQV24463.1	KQV26568.1	ASC54_07885	ASC54_06815	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.764
KQV24463.1	KQV26894.1	ASC54_07885	ASC54_06820	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.747
KQV24464.1	KQV24463.1	ASC54_07890	ASC54_07885	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.786
KQV24464.1	KQV24465.1	ASC54_07890	ASC54_07895	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
KQV24464.1	KQV24466.1	ASC54_07890	ASC54_07900	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
KQV24464.1	KQV24806.1	ASC54_07890	ASC54_09920	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.689
KQV24464.1	KQV26565.1	ASC54_07890	ASC54_06800	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
KQV24464.1	KQV26566.1	ASC54_07890	ASC54_06805	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
KQV24464.1	KQV26567.1	ASC54_07890	ASC54_06810	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.769
KQV24464.1	KQV26568.1	ASC54_07890	ASC54_06815	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.760
KQV24464.1	KQV26894.1	ASC54_07890	ASC54_06820	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.527
KQV24465.1	KQV24463.1	ASC54_07895	ASC54_07885	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.801
KQV24465.1	KQV24464.1	ASC54_07895	ASC54_07890	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922

page 1 of 6

Network Stats

number of nodes:

11

number of edges:

53

average node degree:

9.64

avg. local clustering coefficient:

0.962

expected number of edges:

11

PPI enrichment p-value:

< 1.0e-16

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0010257

NADH dehydrogenase complex assembly

3 of 18

2.23

1.48

0.0016

GO:0022900

Electron transport chain

4 of 67

1.78

1.35

0.0016

GO:0006631

Fatty acid metabolic process

5 of 173

1.46

1.19

0.0016

GO:0006635

Fatty acid beta-oxidation

3 of 44

1.84

1.01

0.0105

GO:0006120

Mitochondrial electron transport, NADH to ubiquinone

2 of 9

2.35

0.97

0.0162

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0009055

Electron transfer activity

3 of 62

1.69

0.67

0.0493

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:1990204

Oxidoreductase complex

4 of 68

1.77

1.7

0.00022

GO:0005747

Mitochondrial respiratory chain complex I

3 of 24

2.1

1.66

0.00059

GO:0005743

Mitochondrial inner membrane

5 of 242

1.32

1.19

0.00059

GO:0005739

Mitochondrion

10 of 1019

1.0

1.15

3.87e-07

GO:0043231

Intracellular membrane-bounded organelle

11 of 4732

0.37

0.31

0.0041

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:8035

NADH dehydrogenase complex assembly

3 of 7

2.64

2.72

8.82e-06

CL:7864

Respiratory electron transport, and Porphyrin and chlorophyll metabolism

6 of 93

1.81

2.71

3.72e-07

CL:7895

NADH dehydrogenase complex

3 of 20

2.18

2.08

8.77e-05

CL:10111

Mixed, incl. Fatty acid beta-oxidation, and Valine, leucine and isoleucine degradation

5 of 126

1.6

1.99

8.96e-06

CL:10125

Fatty acid beta-oxidation, and acyl-CoA dehydrogenase activity

4 of 72

1.75

1.92

4.81e-05

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00071

Fatty acid degradation

3 of 96

1.5

0.84

0.0166

map00190

Oxidative phosphorylation

3 of 138

1.34

0.73

0.0237

map04146

Peroxisome

3 of 150

1.3

0.72

0.0237

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-6799198

Complex I biogenesis

5 of 35

2.16

3.44

6.76e-08

MAP-611105

Respiratory electron transport

6 of 64

1.98

3.38

2.17e-08

MAP-163200

Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins.

6 of 76

1.9

3.21

2.88e-08

MAP-1428517

The citric acid (TCA) cycle and respiratory electron transport

6 of 184

1.52

2.01

2.38e-06

MAP-8978868

Fatty acid metabolism

4 of 266

1.18

0.73

0.0156

(more ...)

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005743

Mitochondrial inner membrane

4 of 172

1.37

0.88

0.0092

GOCC:0005739

Mitochondrion

7 of 803

0.94

0.73

0.0027

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0830

Ubiquinone

2 of 11

2.26

0.96

0.0169

KW-1278

Translocase

2 of 22

1.96

0.81

0.0297

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