STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRB89638.1RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (170 aa)    
Predicted Functional Partners:
KRB89640.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.954
KRB89639.1
Iron dicitrate transport regulator FecR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.950
KRB89328.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.856
KRB88187.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.855
KRB89668.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.837
KRB87478.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.835
KRB94885.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.831
KRB94886.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.769
KRB88188.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.749
KRB89669.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.705
Your Current Organism:
Sphingomonas sp. Root720
NCBI taxonomy Id: 1736595
Other names: S. sp. Root720
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.