KRD66899.1 protein (Lysobacter sp. Root96) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

KRD66899.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)

Predicted Functional Partners:

KRD64792.1

0.723

KRD71635.1

0.644

KRD71379.1

0.634

ASE45_05215

0.570

KRD65893.1

0.565

KRD69253.1

0.564

KRD65795.1

0.562

KRD69254.1

0.524

KRD67667.1

0.522

KRD71013.1

0.498

Your Current Organism:

Lysobacter sp. Root96

NCBI taxonomy Id: 1736612
Other names: L. sp. Root96

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASE45_05215	KRD64792.1	ASE45_05215	ASE45_19330	OmpA-like domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.570
ASE45_05215	KRD65795.1	ASE45_05215	ASE45_17535	OmpA-like domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
ASE45_05215	KRD66899.1	ASE45_05215	ASE45_16490	OmpA-like domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.570
ASE45_05215	KRD69253.1	ASE45_05215	ASE45_08770	OmpA-like domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.571
ASE45_05215	KRD69254.1	ASE45_05215	ASE45_08775	OmpA-like domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.455
ASE45_05215	KRD71635.1	ASE45_05215	ASE45_05220	OmpA-like domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927
KRD64792.1	ASE45_05215	ASE45_19330	ASE45_05215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	OmpA-like domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.570
KRD64792.1	KRD65795.1	ASE45_19330	ASE45_17535	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
KRD64792.1	KRD65893.1	ASE45_19330	ASE45_18070	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
KRD64792.1	KRD66899.1	ASE45_19330	ASE45_16490	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.723
KRD64792.1	KRD67667.1	ASE45_19330	ASE45_13000	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.514
KRD64792.1	KRD69253.1	ASE45_19330	ASE45_08770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.485
KRD64792.1	KRD69254.1	ASE45_19330	ASE45_08775	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.488
KRD64792.1	KRD71013.1	ASE45_19330	ASE45_03975	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.639
KRD64792.1	KRD71379.1	ASE45_19330	ASE45_06090	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.607
KRD64792.1	KRD71635.1	ASE45_19330	ASE45_05220	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
KRD65795.1	ASE45_05215	ASE45_17535	ASE45_05215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	OmpA-like domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
KRD65795.1	KRD64792.1	ASE45_17535	ASE45_19330	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
KRD65795.1	KRD65893.1	ASE45_17535	ASE45_18070	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
KRD65795.1	KRD66899.1	ASE45_17535	ASE45_16490	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.562