STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB03267.1Transcriptional regulator, LacI family. (334 aa)    
Predicted Functional Partners:
SKB03178.1
Glutamate synthase (NADH) large subunit.
    
 
 0.930
SKB03277.1
Cellobiose transport system permease protein.
 
   
 0.863
SKB03273.1
Cellobiose ABC transporter membrane protein.
 
   
 0.846
SKB07386.1
Phosphocarrier protein.
   
 
 0.840
SKB03264.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.
 
  
 0.815
SKB03270.1
Broad-specificity cellobiase.
   
 0.813
SKB07384.1
PTS system D-fructose-specific IIA component (F1P-forming), Frc family /PTS system D-fructose-specific IIB component (F1P-forming), Frc family /PTS system D-fructose-specific IIC component (F1P-forming), Frc family.
     
 0.785
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
       0.768
SKB03282.1
Cellobiose transport system substrate-binding protein.
 
   
 0.740
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
   0.719
Your Current Organism:
Aeromicrobium choanae
NCBI taxonomy Id: 1736691
Other names: A. choanae, Aeromicrobium choanae Ber et al. 2017, Aeromicrobium sp. 9H-4, CCM 8650, LMG 29165, LMG:29165, ZIM B1021, strain 9H-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.