STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB09872.1L-ascorbate metabolism protein UlaG, beta-lactamase superfamily. (264 aa)    
Predicted Functional Partners:
SKB09871.1
Pimeloyl-ACP methyl ester carboxylesterase.
 
     0.886
SKB09870.1
Pimeloyl-ACP methyl ester carboxylesterase.
 
     0.718
SKB09868.1
AAA ATPase domain-containing protein.
 
     0.616
SKB10231.1
Membrane protein.
  
     0.574
SKB09867.1
Regulatory protein, luxR family.
 
     0.527
SKB04135.1
Glycosyl hydrolases family 16.
  
     0.513
SKB09869.1
Non-heme chloroperoxidase.
 
     0.482
SKB09110.1
Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase).
  
     0.418
Your Current Organism:
Aeromicrobium choanae
NCBI taxonomy Id: 1736691
Other names: A. choanae, Aeromicrobium choanae Ber et al. 2017, Aeromicrobium sp. 9H-4, CCM 8650, LMG 29165, LMG:29165, ZIM B1021, strain 9H-4
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