STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCC06357.1N-acyl-D-amino-acid deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (529 aa)    
Predicted Functional Partners:
OCC06354.1
Amino acid deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.815
OCC01129.1
Aspartate carbamoyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.548
OCC06353.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.510
OCC06356.1
Deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.509
OCC06355.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.497
OCC01221.1
Dihydropyrimidine dehydrogenase subunit B; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.492
OCC00394.1
Dihydroorotate dehydrogenase (quinone); Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.480
OCC06350.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.401
OCC06351.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.401
OCC06352.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.401
Your Current Organism:
Labrys sp. WJW
NCBI taxonomy Id: 1737983
Other names: L. sp. WJW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.