STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCC06459.1GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (468 aa)    
Predicted Functional Partners:
OCC06392.1
N-alpha-acetyl diaminobutyric acid deacetylase DoeB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.791
OCC06391.1
Ectoine hydrolase DoeA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.690
OCC04916.1
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.678
OCC06390.1
Ornithine cyclodeaminase family protein; Cyclodeaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.672
OCC04289.1
trpE(G); catalyzes the formation of anthranilate from chorismate and glutamine; contains both component I and II; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.648
OCC01410.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
  0.568
OCC01332.1
Condensation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.568
OCC02488.1
Aspartate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.566
OCC06389.1
Hydroxyectoine utilization dehydratase EutB; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.565
OCC06460.1
Ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.544
Your Current Organism:
Labrys sp. WJW
NCBI taxonomy Id: 1737983
Other names: L. sp. WJW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.