STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCC05580.1methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO; Derived by automated computational analysis using gene prediction method: Protein Homology. (470 aa)    
Predicted Functional Partners:
OCC01781.1
tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.749
OCC01472.1
Di-trans,poly-cis-decaprenylcistransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.728
OCC01161.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.530
OCC01463.1
proline--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.529
OCC03300.1
CTP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.516
OCC03248.1
tRNA (guanosine(37)-N1)-methyltransferase TrmD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.478
OCC06499.1
arginine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.467
OCC01027.1
Polyribonucleotide nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.449
OCC01951.1
Adenylosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.446
OCC01124.1
DNA topoisomerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.436
Your Current Organism:
Labrys sp. WJW
NCBI taxonomy Id: 1737983
Other names: L. sp. WJW
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.