STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCC05400.1Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (579 aa)    
Predicted Functional Partners:
OCC05401.1
Conjugal transfer protein TraG; Type IV secretion VirD4 coupling protein family; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.954
OCC05402.1
CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.941
OCC05398.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.881
OCC05395.1
Replication protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.863
OCC05396.1
Glycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.863
OCC05397.1
S26 family signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.863
OCC05394.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.859
OCC05399.1
Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.836
OCC05406.1
Conjugal transfer protein TrbE; Type IV secretion system VirB4 family; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.830
OCC05532.1
DUF2285 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.805
Your Current Organism:
Labrys sp. WJW
NCBI taxonomy Id: 1737983
Other names: L. sp. WJW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.