STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCC04689.1Signal peptidase I; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)    
Predicted Functional Partners:
OCC04691.1
Ribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.936
OCC02985.1
ATP F0F1 synthase subunit C; Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.821
OCC03525.1
DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.807
OCC04354.1
ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.795
OCC06434.1
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.763
OCC05151.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.763
OCC05516.1
MBL fold metallo-hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.750
OCC04421.1
DNA ligase-associated DEXH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.750
OCC05575.1
Protein-export membrane protein SecD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.719
OCC05576.1
Protein-export membrane protein SecF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.701
Your Current Organism:
Labrys sp. WJW
NCBI taxonomy Id: 1737983
Other names: L. sp. WJW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.