OCC03905.1 protein (Labrys sp. WJW) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OCC03905.1

Formylmethanofuran dehydrogenase subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology. (544 aa)

Predicted Functional Partners:

OCC03904.1

0.999

OCC04066.1

0.999

OCC03906.1

0.999

OCC03272.1

0.984

OCC01276.1

0.984

OCC03901.1

0.969

OCC03902.1

0.888

OCC04065.1

0.888

OCC03903.1

0.879

OCC03899.1

0.863

Your Current Organism:

Labrys sp. WJW

NCBI taxonomy Id: 1737983
Other names: L. sp. WJW

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OCC01276.1	OCC03272.1	BA190_29640	BA190_19465	Protein GlxC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
OCC01276.1	OCC03904.1	BA190_29640	BA190_15480	Protein GlxC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
OCC01276.1	OCC03905.1	BA190_29640	BA190_15485	Protein GlxC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formylmethanofuran dehydrogenase subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
OCC01276.1	OCC04066.1	BA190_29640	BA190_15490	Protein GlxC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formylmethanofuran--tetrahydromethanopterin N-formyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.658
OCC03272.1	OCC01276.1	BA190_19465	BA190_29640	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein GlxC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
OCC03272.1	OCC03903.1	BA190_19465	BA190_15470	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methylenetetrahydromethanopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
OCC03272.1	OCC03904.1	BA190_19465	BA190_15480	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
OCC03272.1	OCC03905.1	BA190_19465	BA190_15485	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formylmethanofuran dehydrogenase subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
OCC03272.1	OCC04066.1	BA190_19465	BA190_15490	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formylmethanofuran--tetrahydromethanopterin N-formyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.781
OCC03899.1	OCC03901.1	BA190_15450	BA190_15460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methenyltetrahydromethanopterin cyclohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
OCC03899.1	OCC03902.1	BA190_15450	BA190_15465	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
OCC03899.1	OCC03903.1	BA190_15450	BA190_15470	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methylenetetrahydromethanopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
OCC03899.1	OCC03904.1	BA190_15450	BA190_15480	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.863
OCC03899.1	OCC03905.1	BA190_15450	BA190_15485	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formylmethanofuran dehydrogenase subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.863
OCC03899.1	OCC03906.1	BA190_15450	BA190_15495	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formylmethanofuran dehydrogenase subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.863
OCC03899.1	OCC04065.1	BA190_15450	BA190_15475	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
OCC03899.1	OCC04066.1	BA190_15450	BA190_15490	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formylmethanofuran--tetrahydromethanopterin N-formyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.863
OCC03901.1	OCC03899.1	BA190_15460	BA190_15450	Methenyltetrahydromethanopterin cyclohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
OCC03901.1	OCC03902.1	BA190_15460	BA190_15465	Methenyltetrahydromethanopterin cyclohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.968
OCC03901.1	OCC03903.1	BA190_15460	BA190_15470	Methenyltetrahydromethanopterin cyclohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methylenetetrahydromethanopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992