STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCC02959.1glycine--tRNA ligase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)    
Predicted Functional Partners:
OCC02957.1
glycine--tRNA ligase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.999
OCC01354.1
histidine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.821
OCC01899.1
alanine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.774
OCC05569.1
serine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.713
BA190_34495
Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start and stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.707
OCC01022.1
phenylalanine--tRNA ligase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.689
OCC04975.1
isoleucine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.671
OCC01990.1
ATP synthase F1 subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.670
OCC03330.1
aspartate--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.665
OCC06312.1
Glutamine-hydrolyzing GMP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.654
Your Current Organism:
Labrys sp. WJW
NCBI taxonomy Id: 1737983
Other names: L. sp. WJW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.