STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCC02702.1Siderophore-iron reductase FhuF; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)    
Predicted Functional Partners:
OCC02701.1
Ferrichrome-iron receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.797
OCC02772.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.782
OCC05490.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.639
OCC02476.1
Iron-hydroxamate transporter substrate-binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.608
OCC05500.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.576
OCC00569.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.529
OCC00558.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.528
OCC05191.1
Protein TolA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
    0.526
OCC04894.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
    0.526
OCC02931.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
    0.526
Your Current Organism:
Labrys sp. WJW
NCBI taxonomy Id: 1737983
Other names: L. sp. WJW
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