STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCC01908.1tyrosine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)    
Predicted Functional Partners:
OCC03414.1
phenylalanine--tRNA ligase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.937
OCC05624.1
methionine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.867
OCC05202.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.820
OCC02427.1
Peptide chain release factor 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.798
OCC00473.1
tRNA pseudouridine(55) synthase TruB; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.778
OCC01469.1
Translation elongation factor Ts; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.769
OCC06499.1
arginine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.759
OCC04975.1
isoleucine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.748
OCC03330.1
aspartate--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.715
OCC01161.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.706
Your Current Organism:
Labrys sp. WJW
NCBI taxonomy Id: 1737983
Other names: L. sp. WJW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.