STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCC01917.1Isocitrate dehydrogenase, NADP-dependent; Derived by automated computational analysis using gene prediction method: Protein Homology. (746 aa)    
Predicted Functional Partners:
OCC03272.1
Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.949
sucC
succinate--CoA ligase subunit beta; Catalyzes the interconversion of succinyl-CoA and succinate; incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.927
OCC00773.1
Aconitate hydratase 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.829
OCC01915.1
Isocitrate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.795
OCC05900.1
NAD-glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.742
BA190_19420
Dihydrolipoamide succinyltransferase; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.742
OCC01277.1
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.709
OCC01951.1
Adenylosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.690
OCC02155.1
3-carboxy-cis,cis-muconate cycloisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.661
OCC07013.1
Pyruvate dehydrogenase (acetyl-transferring), homodimeric type; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.635
Your Current Organism:
Labrys sp. WJW
NCBI taxonomy Id: 1737983
Other names: L. sp. WJW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.