OCC01263.1 protein (Labrys sp. WJW) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

OCC01263.1

Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa)

Predicted Functional Partners:

OCC01306.1

0.965

OCC06320.1

0.655

OCC01652.1

0.627

OCC02859.1

0.626

OCC00313.1

0.623

OCC03529.1

0.590

OCC02857.1

0.590

OCC02479.1

0.590

OCC01218.1

0.590

OCC05578.1

0.586

Your Current Organism:

Labrys sp. WJW

NCBI taxonomy Id: 1737983
Other names: L. sp. WJW

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OCC00313.1	OCC01263.1	BA190_34620	BA190_29550	Acid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
OCC00313.1	OCC01652.1	BA190_34620	BA190_27775	Acid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chloride channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.490
OCC01218.1	OCC01263.1	BA190_30020	BA190_29550	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
OCC01218.1	OCC02859.1	BA190_30020	BA190_21575	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.557
OCC01263.1	OCC00313.1	BA190_29550	BA190_34620	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
OCC01263.1	OCC01218.1	BA190_29550	BA190_30020	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
OCC01263.1	OCC01306.1	BA190_29550	BA190_29555	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.965
OCC01263.1	OCC01652.1	BA190_29550	BA190_27775	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chloride channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.627
OCC01263.1	OCC02479.1	BA190_29550	BA190_23860	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
OCC01263.1	OCC02857.1	BA190_29550	BA190_21565	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
OCC01263.1	OCC02859.1	BA190_29550	BA190_21575	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.626
OCC01263.1	OCC03529.1	BA190_29550	BA190_17465	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
OCC01263.1	OCC05578.1	BA190_29550	BA190_07375	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.586
OCC01263.1	OCC06320.1	BA190_29550	BA190_03545	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655
OCC01306.1	OCC01263.1	BA190_29555	BA190_29550	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.965
OCC01306.1	OCC02859.1	BA190_29555	BA190_21575	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
OCC01652.1	OCC00313.1	BA190_27775	BA190_34620	Chloride channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.490
OCC01652.1	OCC01263.1	BA190_27775	BA190_29550	Chloride channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.627
OCC02479.1	OCC01263.1	BA190_23860	BA190_29550	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
OCC02479.1	OCC02859.1	BA190_23860	BA190_21575	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.527