OCC00455.1 protein (Labrys sp. WJW) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OCC00455.1

ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)

Predicted Functional Partners:

OCC00456.1

0.953

OCC00454.1

0.868

OCC00453.1

0.834

OCC04333.1

0.816

OCC00459.1

0.773

OCC00609.1

0.771

OCC00457.1

0.767

OCC00458.1

0.709

OCC01867.1

0.595

OCC05925.1

0.537

Your Current Organism:

Labrys sp. WJW

NCBI taxonomy Id: 1737983
Other names: L. sp. WJW

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OCC00453.1	OCC00454.1	BA190_33890	BA190_33895	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
OCC00453.1	OCC00455.1	BA190_33890	BA190_33905	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.834
OCC00453.1	OCC00456.1	BA190_33890	BA190_33910	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	VWA domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.838
OCC00453.1	OCC00457.1	BA190_33890	BA190_33915	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	XdhC/CoxI family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.853
OCC00453.1	OCC00458.1	BA190_33890	BA190_33920	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	XdhC/CoxF family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
OCC00453.1	OCC00459.1	BA190_33890	BA190_33925	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.825
OCC00453.1	OCC04333.1	BA190_33890	BA190_14060	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
OCC00454.1	OCC00453.1	BA190_33895	BA190_33890	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
OCC00454.1	OCC00455.1	BA190_33895	BA190_33905	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.868
OCC00454.1	OCC00456.1	BA190_33895	BA190_33910	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	VWA domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.862
OCC00454.1	OCC00457.1	BA190_33895	BA190_33915	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	XdhC/CoxI family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
OCC00454.1	OCC00458.1	BA190_33895	BA190_33920	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	XdhC/CoxF family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
OCC00454.1	OCC00459.1	BA190_33895	BA190_33925	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.880
OCC00454.1	OCC00609.1	BA190_33895	BA190_32960	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975
OCC00454.1	OCC04333.1	BA190_33895	BA190_14060	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
OCC00455.1	OCC00453.1	BA190_33905	BA190_33890	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.834
OCC00455.1	OCC00454.1	BA190_33905	BA190_33895	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.868
OCC00455.1	OCC00456.1	BA190_33905	BA190_33910	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	VWA domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
OCC00455.1	OCC00457.1	BA190_33905	BA190_33915	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	XdhC/CoxI family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
OCC00455.1	OCC00458.1	BA190_33905	BA190_33920	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	XdhC/CoxF family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.709