STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMW29071.1Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)    
Predicted Functional Partners:
AMW29814.1
50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.912
AMW31053.1
tRNA modification GTPase TrmE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.899
AMW29635.1
GTPase Obg; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.873
AMW31393.1
rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.862
AMW29023.1
Ribosome biogenesis GTPase YlqF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.860
AMW28212.1
50S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.859
AMW28646.1
Ribosome-associated protein IOJAP; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.857
AMW28196.1
50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.853
AMW28219.1
50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.845
AMW30828.1
RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.843
Your Current Organism:
Arthrospira platensis YZ
NCBI taxonomy Id: 1738638
Other names: A. platensis YZ
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