node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OFK22247.1 | OFK24009.1 | HMPREF2826_02230 | HMPREF2826_08705 | DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology. | single-stranded-DNA-specific exonuclease RecJ; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.999 |
OFK22247.1 | polA | HMPREF2826_02230 | HMPREF2826_05785 | DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.999 |
OFK22247.1 | uvrB | HMPREF2826_02230 | HMPREF2826_05830 | DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.545 |
OFK22247.1 | uvrC | HMPREF2826_02230 | HMPREF2826_05990 | DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.855 |
OFK22247.1 | xseA | HMPREF2826_02230 | HMPREF2826_07905 | DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology. | Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.705 |
OFK22247.1 | xseB | HMPREF2826_02230 | HMPREF2826_07900 | DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology. | Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.628 |
OFK24009.1 | OFK22247.1 | HMPREF2826_08705 | HMPREF2826_02230 | single-stranded-DNA-specific exonuclease RecJ; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.999 |
OFK24009.1 | nusG | HMPREF2826_08705 | HMPREF2826_01055 | single-stranded-DNA-specific exonuclease RecJ; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcription termination/antitermination protein NusG; Participates in transcription elongation, termination and antitermination. | 0.424 |
OFK24009.1 | polA | HMPREF2826_08705 | HMPREF2826_05785 | single-stranded-DNA-specific exonuclease RecJ; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.999 |
OFK24009.1 | uvrB | HMPREF2826_08705 | HMPREF2826_05830 | single-stranded-DNA-specific exonuclease RecJ; Derived by automated computational analysis using gene prediction method: Protein Homology. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.595 |
OFK24009.1 | uvrC | HMPREF2826_08705 | HMPREF2826_05990 | single-stranded-DNA-specific exonuclease RecJ; Derived by automated computational analysis using gene prediction method: Protein Homology. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.610 |
OFK24009.1 | xseA | HMPREF2826_08705 | HMPREF2826_07905 | single-stranded-DNA-specific exonuclease RecJ; Derived by automated computational analysis using gene prediction method: Protein Homology. | Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.640 |
OFK24009.1 | xseB | HMPREF2826_08705 | HMPREF2826_07900 | single-stranded-DNA-specific exonuclease RecJ; Derived by automated computational analysis using gene prediction method: Protein Homology. | Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.623 |
OFK24345.1 | xseA | HMPREF2826_07910 | HMPREF2826_07905 | Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.687 |
OFK24345.1 | xseB | HMPREF2826_07910 | HMPREF2826_07900 | Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.544 |
OFK24861.1 | xseA | HMPREF2826_06505 | HMPREF2826_07905 | Exodeoxyribonuclease VII; Derived by automated computational analysis using gene prediction method: Protein Homology. | Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.903 |
OFK24861.1 | xseB | HMPREF2826_06505 | HMPREF2826_07900 | Exodeoxyribonuclease VII; Derived by automated computational analysis using gene prediction method: Protein Homology. | Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.903 |
folD | polA | HMPREF2826_07980 | HMPREF2826_05785 | Methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.556 |
folD | xseA | HMPREF2826_07980 | HMPREF2826_07905 | Methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.620 |
nusG | OFK24009.1 | HMPREF2826_01055 | HMPREF2826_08705 | Transcription termination/antitermination protein NusG; Participates in transcription elongation, termination and antitermination. | single-stranded-DNA-specific exonuclease RecJ; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.424 |