STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001509585_00165Unannotated protein. (80 aa)    
Predicted Functional Partners:
GCA_001509585_00163
Unannotated protein.
     
 0.860
GCA_001509585_00164
Unannotated protein.
       0.813
GCA_001509585_03439
Unannotated protein.
  
 
 0.765
GCA_001509585_00166
Unannotated protein.
       0.660
GCA_001509585_00167
Unannotated protein.
       0.660
GCA_001509585_04944
Unannotated protein.
  
     0.622
GCA_001509585_00888
Unannotated protein.
   
   0.602
GCA_001509585_04645
Unannotated protein.
   
   0.584
GCA_001509585_01252
Unannotated protein.
   
   0.559
GCA_001509585_00887
Unannotated protein.
    
   0.557
Your Current Organism:
Pseudoruegeria marinistellae
NCBI taxonomy Id: 1739787
Other names: KCTC 42910, MCCC 1K01155, P. marinistellae, Pseudoruegeria marinistellae Zhang et al. 2017, Pseudoruegeria sp. SF-16, strain SF-16
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