STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001509585_00653Unannotated protein. (276 aa)    
Predicted Functional Partners:
GCA_001509585_02912
Unannotated protein.
     
 0.804
GCA_001509585_00657
Unannotated protein.
 
 0.693
GCA_001509585_02169
Unannotated protein.
   
 0.689
GCA_001509585_03411
Unannotated protein.
   
 0.689
GCA_001509585_04459
Unannotated protein.
 
 0.634
GCA_001509585_00632
Unannotated protein.
   
 0.576
GCA_001509585_02844
Unannotated protein.
 
 0.564
GCA_001509585_01571
Unannotated protein.
 
0.554
GCA_001509585_02638
Unannotated protein.
  
 
  0.542
GCA_001509585_00417
Unannotated protein.
 
 
 
  0.538
Your Current Organism:
Pseudoruegeria marinistellae
NCBI taxonomy Id: 1739787
Other names: KCTC 42910, MCCC 1K01155, P. marinistellae, Pseudoruegeria marinistellae Zhang et al. 2017, Pseudoruegeria sp. SF-16, strain SF-16
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