STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001509585_01406Unannotated protein. (316 aa)    
Predicted Functional Partners:
GCA_001509585_04654
Unannotated protein.
 
    0.915
GCA_001509585_01442
Unannotated protein.
 
  
 0.805
GCA_001509585_01702
Unannotated protein.
  
    0.803
GCA_001509585_04061
Unannotated protein.
  
  
 0.755
GCA_001509585_04680
Unannotated protein.
 
   
 0.709
GCA_001509585_02305
Unannotated protein.
 
   
 0.669
GCA_001509585_03914
Unannotated protein.
  
  
 0.654
GCA_001509585_04717
Unannotated protein.
   
    0.616
GCA_001509585_00904
Unannotated protein.
 
   
 0.552
GCA_001509585_03429
Unannotated protein.
    
 0.542
Your Current Organism:
Pseudoruegeria marinistellae
NCBI taxonomy Id: 1739787
Other names: KCTC 42910, MCCC 1K01155, P. marinistellae, Pseudoruegeria marinistellae Zhang et al. 2017, Pseudoruegeria sp. SF-16, strain SF-16
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