STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001509585_01518Unannotated protein. (714 aa)    
Predicted Functional Partners:
GCA_001509585_01517
Unannotated protein.
    0.944
GCA_001509585_01985
Unannotated protein.
    0.821
GCA_001509585_02472
Unannotated protein.
    0.820
GCA_001509585_01978
Unannotated protein.
    0.810
GCA_001509585_01519
Unannotated protein.
       0.773
GCA_001509585_00391
Unannotated protein.
 
    0.761
GCA_001509585_01516
Unannotated protein.
       0.600
GCA_001509585_01520
Unannotated protein.
       0.558
GCA_001509585_01521
Unannotated protein.
       0.558
GCA_001509585_01522
Unannotated protein.
       0.537
Your Current Organism:
Pseudoruegeria marinistellae
NCBI taxonomy Id: 1739787
Other names: KCTC 42910, MCCC 1K01155, P. marinistellae, Pseudoruegeria marinistellae Zhang et al. 2017, Pseudoruegeria sp. SF-16, strain SF-16
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