STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001509585_02787Unannotated protein. (500 aa)    
Predicted Functional Partners:
GCA_001509585_02788
Unannotated protein.
  0.982
GCA_001509585_02786
Unannotated protein.
 
  0.930
GCA_001509585_00968
Unannotated protein.
 
  0.909
GCA_001509585_00962
Unannotated protein.
 
  0.908
GCA_001509585_01791
Unannotated protein.
 
  0.905
GCA_001509585_03039
Unannotated protein.
 
  0.905
GCA_001509585_00055
Unannotated protein.
 
  0.883
GCA_001509585_04517
Unannotated protein.
 
  0.874
GCA_001509585_02009
Unannotated protein.
 
  0.864
GCA_001509585_00889
Unannotated protein.
 
   
  0.859
Your Current Organism:
Pseudoruegeria marinistellae
NCBI taxonomy Id: 1739787
Other names: KCTC 42910, MCCC 1K01155, P. marinistellae, Pseudoruegeria marinistellae Zhang et al. 2017, Pseudoruegeria sp. SF-16, strain SF-16
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