STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH54851.1Hypothetical protein. (480 aa)    
Predicted Functional Partners:
SEH92563.1
Signal transduction histidine kinase.
   
 0.954
SEH92260.1
PAS domain S-box-containing protein.
    
 0.889
SEH91838.1
Two-component system, NarL family, sensor histidine kinase BarA.
   
 0.874
SEH54863.1
Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain.
  
 
 0.858
SEI06414.1
Signal transduction histidine kinase.
   
 0.849
SEI09449.1
Two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB.
   
 0.849
SEH57775.1
Na+/proline symporter.
    
 0.813
SEH95315.1
Na+/proline symporter.
    
 0.813
SEI07988.1
PAS domain S-box-containing protein.
   
 0.803
SEH93267.1
Response regulator receiver domain-containing protein.
   
 0.790
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.