STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH58159.1Glycosyl hydrolases family 16. (709 aa)    
Predicted Functional Partners:
SEH58173.1
TonB-dependent receptor.
 
     0.888
SEI05039.1
Cyclic beta-1,2-glucan synthetase.
    
  0.767
SEH67033.1
Beta-glucosidase.
 
  
  0.731
SEH73743.1
Glycosyl hydrolase family 3 C-terminal domain-containing protein.
 
  
  0.704
SEH73754.1
Beta-glucosidase.
 
  
  0.698
SEH64928.1
TonB-dependent receptor.
 
     0.687
SEH55981.1
Exo-1,4-beta-glucosidase.
 
  
  0.684
SEH56826.1
Fucose permease.
  
     0.642
SEH59129.1
Porin.
  
     0.551
SEH66977.1
TonB-dependent receptor.
  
     0.492
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.