STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH59536.1Outer membrane scaffolding protein for murein synthesis, MipA/OmpV family. (281 aa)    
Predicted Functional Partners:
SEH59522.1
Protein of unknown function.
       0.804
SEH59509.1
Outer membrane receptor proteins, mostly Fe transport.
 
     0.772
SEH63915.1
Polysaccharide deacetylase.
  
     0.679
SEH89393.1
TonB-dependent receptor.
  
     0.665
SEH55679.1
F5/8 type C domain-containing protein.
  
     0.619
SEH59484.1
Signal transduction histidine kinase.
 
     0.566
xseA
Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
       0.551
SEH77314.1
TonB-dependent receptor.
  
     0.540
SEH78002.1
Acetyltransferase (GNAT) family protein.
  
     0.528
SEH97997.1
TPR repeat-containing protein.
  
     0.512
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.