STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH60705.1Type IV pilus assembly protein PilY1. (1144 aa)    
Predicted Functional Partners:
SEH60692.1
Type IV pilus assembly protein PilX.
 
  
 0.995
SEH60677.1
Type IV pilus assembly protein PilW.
 
  
 0.993
SEH60718.1
Type IV pilus assembly protein PilE.
 
  
 0.989
SEH60661.1
Type IV pilus assembly protein PilV.
 
  
 0.981
SEH60645.1
Type IV fimbrial biogenesis protein FimT.
 
  
 0.969
SEH60790.1
Type IV pilus assembly protein PilE.
 
  
 0.966
SEH60747.1
Type IV Pilus-assembly protein W.
 
  
 0.954
SEH60732.1
Type IV pilus assembly protein PilV.
 
  
 0.933
SEI11303.1
MSHA biogenesis protein MshP.
  
  
 0.852
SEH83774.1
Type IV pilus assembly protein PilN.
 
  
 0.778
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.