STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH63558.1Uncharacterized iron-regulated membrane protein. (405 aa)    
Predicted Functional Partners:
SEH63570.1
Iron complex outermembrane recepter protein.
 
     0.888
SEH67684.1
Uncharacterized iron-regulated membrane protein.
  
     0.704
SEH64235.1
Uncharacterized iron-regulated membrane protein.
  
     0.572
SEI03692.1
Outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid.
 
  
 0.543
SEH63587.1
Antitoxin component YwqK of the YwqJK toxin-antitoxin module.
       0.492
SEH67336.1
Outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid.
 
  
 0.474
SEH67233.1
Hypothetical protein.
  
    0.456
SEI00917.1
TonB-dependent receptor.
  
     0.403
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.