STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH63985.1Hypothetical protein. (220 aa)    
Predicted Functional Partners:
SEH59949.1
N-acetylmuramoyl-L-alanine amidase.
    
   0.706
SEH77960.1
Membrane-bound lytic murein transglycosylase D.
    
   0.706
SEH97058.1
Curlin associated repeat-containing protein.
    
   0.706
SEH97071.1
Minor curlin subunit.
    
   0.706
SEH88133.1
Protein of unknown function.
  
  
 0.670
SEH88149.1
Hypothetical protein.
  
  
 0.670
SEH77776.1
Phage shock protein C (PspC) family protein.
  
  
 0.619
SEH93311.1
Phage shock protein C (PspC) family protein.
  
  
 0.619
SEH55327.1
FecR family protein.
  
 
  0.517
SEH77745.1
Phage shock protein A (PspA) family protein.
  
  
 0.487
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.